KnowledgeBase Content Details

June 11, 2019

Question:

How to check running jobs/tasks on the Cluster

Answer:

When performing batch analysis ColumbusPlus will create many Cluster jobs, better descried as tasks. Normally a task for preprocessing, a task per well and finally a postprocessing task. So for a full 384 well plate it would create 386 Cluster tasks. At any time if you wanted to check what was queued on the cluster:

Connect to the Cluster via command line interface

Slurm use command:

$ squeue

Further details on options can be found here.

SGE use command:

$ qstat

Further details on options can be found here.

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